1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G085600.1

Sobic.005G085600.1


Description : substrate(PAL) adaptor of SCF E3 ubiquitin ligase *(KFB-PAL)


Gene families : OG_42_0000514 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G085600.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
At2g44130 No alias F-box/kelch-repeat protein At2g44130... 0.02 Orthogroups_2024-Update
Bradi4g21000 No alias Galactose oxidase/kelch repeat superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G025783 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 Orthogroups_2024-Update
HORVU4Hr1G014970.1 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase *(KFB-PAL) 0.03 Orthogroups_2024-Update
HORVU4Hr1G015000.2 No alias substrate(PAL) adaptor of SCF E3 ubiquitin ligase *(KFB-PAL) 0.02 Orthogroups_2024-Update
MA_428227g0010 No alias (at1g80440 : 236.0) Galactose oxidase/kelch repeat... 0.03 Orthogroups_2024-Update
Mp1g09260.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Mp1g25730.1 No alias Putative F-box/kelch-repeat protein At1g27420... 0.02 Orthogroups_2024-Update
Mp6g10520.1 No alias proteolytic phenylalanine ammonia-lyase regulator (KFB-PAL) 0.02 Orthogroups_2024-Update
PSME_00049484-RA No alias (at1g80440 : 110.0) Galactose oxidase/kelch repeat... 0.02 Orthogroups_2024-Update
Potri.001G007000 No alias Galactose oxidase/kelch repeat superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G196900 No alias Galactose oxidase/kelch repeat superfamily protein 0.03 Orthogroups_2024-Update
Pp1s24_275V6 No alias F6E13.26; kelch repeat-containing F-box family protein... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001810 F-box_dom 28 60
IPR006652 Kelch_1 178 224
No external refs found!