1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G087600.2

Sobic.005G087600.2


Description : subgroup ERF-III transcription factor


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G087600.2
Cluster HCAA Clusters: Cluster_142

Target Alias Description ECC score Gene Family Method Actions
A4A49_03112 No alias ethylene-responsive transcription factor crf4 0.03 Orthogroups_2024-Update
A4A49_39586 No alias ethylene-responsive transcription factor erf106 0.02 Orthogroups_2024-Update
AC198403.3_FG001 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
At1g71450 No alias Ethylene-responsive transcription factor ERF021... 0.03 Orthogroups_2024-Update
At1g74930 No alias Ethylene-responsive transcription factor ERF018... 0.03 Orthogroups_2024-Update
At2g33710 No alias Integrase-type DNA-binding superfamily protein... 0.04 Orthogroups_2024-Update
Bradi1g36590 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g46690 No alias related to AP2 12 0.03 Orthogroups_2024-Update
Bradi2g24175 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g52370 No alias erf domain protein 9 0.03 Orthogroups_2024-Update
Bradi4g35570 No alias C-repeat/DRE binding factor 2 0.03 Orthogroups_2024-Update
Brara.B00844.1 No alias transcription factor *(ERN1) & subgroup ERF-V... 0.03 Orthogroups_2024-Update
Brara.C01398.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Brara.K01035.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G039870 No alias related to AP2 4 0.02 Orthogroups_2024-Update
Glyma.01G206600 No alias ethylene responsive element binding factor 1 0.03 Orthogroups_2024-Update
Glyma.04G147500 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Glyma.04G217400 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G295300 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G244867 No alias ethylene-responsive element binding protein 0.03 Orthogroups_2024-Update
Glyma.10G067000 No alias C-repeat/DRE binding factor 1 0.03 Orthogroups_2024-Update
Glyma.12G162700 No alias ethylene responsive element binding factor 4 0.04 Orthogroups_2024-Update
HORVU2Hr1G077180.2 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
LOC_Os04g44670 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g10780 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g11460 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10274g0010 No alias (at5g13330 : 108.0) encodes a member of the ERF... 0.03 Orthogroups_2024-Update
MA_4032g0010 No alias (q9sxs8|erf3_tobac : 85.1) Ethylene-responsive... 0.03 Orthogroups_2024-Update
MA_9321671g0010 No alias (at2g36450 : 102.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00022946-RA No alias (at5g61890 : 105.0) encodes a member of the ERF... 0.02 Orthogroups_2024-Update
PSME_00037533-RA No alias (at5g61890 : 108.0) encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00052454-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00056166-RA No alias (at5g11590 : 103.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
Potri.001G004700 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.003G077700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G186300 No alias DORNROSCHEN-like 0.03 Orthogroups_2024-Update
Potri.010G186400 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G056700 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.015G136300 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G053700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Pp1s23_8V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.1G187900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G156100.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.5G320400.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G310600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G240500.1 No alias subgroup ERF-II-DEAR transcription factor 0.03 Orthogroups_2024-Update
Solyc02g077370 No alias Ethylene Response Factor C.5 0.03 Orthogroups_2024-Update
Solyc06g082590 No alias DNA-binding protein Pti6 0.04 Orthogroups_2024-Update
Solyc11g042560 No alias Ethylene-responsive transcription factor ERF021 family... 0.03 Orthogroups_2024-Update
Sopen05g030960 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen08g003200 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen09g030200 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0017148 negative regulation of translation IEP Predicted GO
MF GO:0030597 RNA glycosylase activity IEP Predicted GO
MF GO:0030598 rRNA N-glycosylase activity IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051248 negative regulation of protein metabolic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 18 67
No external refs found!