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  5. Sobic.005G110499.1

Sobic.005G110499.1


Description : component *(Sec23) of Sec23/24 cargo adaptor subcomplex


Gene families : OG_42_0001214 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001214_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G110499.1
Cluster HCAA Clusters: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
Bradi4g19570 No alias Sec23/Sec24 protein transport family protein 0.03 Orthogroups_2024-Update
Glyma.11G253500 No alias Sec23/Sec24 protein transport family protein 0.03 Orthogroups_2024-Update
Glyma.18G003500 No alias Sec23/Sec24 protein transport family protein 0.04 Orthogroups_2024-Update
LOC_Os11g24560 No alias protein transport protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s55_55V6 No alias protein transport protein 0.03 Orthogroups_2024-Update
Seita.4G044200.1 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex 0.04 Orthogroups_2024-Update
Seita.8G114200.1 No alias component *(Sec23) of Sec23/24 cargo adaptor subcomplex 0.03 Orthogroups_2024-Update
Sopen05g032300 No alias Sec23/Sec24 trunk domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA 16Dec
BP GO:0006888 ER to Golgi vesicle-mediated transport IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
CC GO:0030127 COPII vesicle coat IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR006895 Znf_Sec23_Sec24 69 108
IPR006896 Sec23/24_trunk_dom 145 420
IPR006900 Sec23/24_helical_dom 549 647
IPR012990 Sec23_24_beta_S 431 535
IPR007123 Gelsolin-like_dom 663 749
No external refs found!