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  5. Sobic.005G112400.1

Sobic.005G112400.1


Description : EC_3.4 hydrolase acting on peptide bond (peptidase) & C1-class subclass SAG12 cysteine protease


Gene families : OG_42_0000364 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000364_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G112400.1
Cluster HCAA Clusters: Cluster_274

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G279100 No alias senescence-associated gene 12 0.01 Orthogroups_2024-Update
Glyma.06G283000 No alias senescence-associated gene 12 0.02 Orthogroups_2024-Update
Sopen02g021890 No alias Papain family cysteine protease 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006508 proteolysis IEA 16Dec
MF GO:0008234 cysteine-type peptidase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR013201 Prot_inhib_I29 49 106
IPR000668 Peptidase_C1A_C 139 348
No external refs found!