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  5. Sobic.005G145300.1

Sobic.005G145300.1


Description : substrate adaptor of SCF E3 ubiquitin ligase *(ADO)


Gene families : OG_42_0002411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002411_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G145300.1
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
174189 No alias Galactose oxidase/kelch repeat superfamily protein 0.02 Orthogroups_2024-Update
A4A49_16690 No alias adagio protein 3 0.03 Orthogroups_2024-Update
At1g68050 No alias FKF1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8F6] 0.03 Orthogroups_2024-Update
Bradi4g16630 No alias flavin-binding, kelch repeat, f box 1 0.03 Orthogroups_2024-Update
Brara.G00141.1 No alias substrate adaptor of SCF E3 ubiquitin ligase *(ADO) 0.05 Orthogroups_2024-Update
GRMZM2G106363 No alias flavin-binding, kelch repeat, f box 1 0.04 Orthogroups_2024-Update
GRMZM2G107945 No alias flavin-binding, kelch repeat, f box 1 0.03 Orthogroups_2024-Update
Glyma.05G239400 No alias flavin-binding, kelch repeat, f box 1 0.03 Orthogroups_2024-Update
HORVU4Hr1G039300.2 No alias substrate adaptor of SCF E3 ubiquitin ligase *(ADO) 0.05 Orthogroups_2024-Update
Seita.8G146900.1 No alias substrate adaptor of SCF E3 ubiquitin ligase *(ADO) 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0043085 positive regulation of catalytic activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0044093 positive regulation of molecular function IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
InterPro domains Description Start Stop
IPR011498 Kelch_2 498 545
IPR001810 F-box_dom 186 226
IPR000014 PAS 39 137
No external refs found!