1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G165900.1

Sobic.005G165900.1


Description : Unknown function


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G165900.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
129201 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
A4A49_24130 No alias e3 ubiquitin-protein ligase ring1-like protein 0.05 Orthogroups_2024-Update
A4A49_41488 No alias e3 ubiquitin-protein ligase rduf1 0.03 Orthogroups_2024-Update
At1g14200 No alias At1g14200 [Source:UniProtKB/TrEMBL;Acc:Q9XI67] 0.07 Orthogroups_2024-Update
At1g26800 No alias E3 ubiquitin-protein ligase MPSR1... 0.04 Orthogroups_2024-Update
At3g13228 No alias RING/U-box superfamily protein... 0.07 Orthogroups_2024-Update
At3g30460 No alias RING/U-box superfamily protein... 0.03 Orthogroups_2024-Update
At5g01980 No alias At5g01980 [Source:UniProtKB/TrEMBL;Acc:Q9LZN3] 0.04 Orthogroups_2024-Update
Bradi2g01290 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Bradi3g37800 No alias RING/U-box superfamily protein 0.08 Orthogroups_2024-Update
Bradi3g56300 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g44277 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02841.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.C00964.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.03 Orthogroups_2024-Update
Brara.C02094.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.C03342.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.E02211.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.02 Orthogroups_2024-Update
Brara.G02768.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.H02157.1 No alias E3 ubiquitin ligase *(SNIPER) 0.02 Orthogroups_2024-Update
Brara.I03147.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.05 Orthogroups_2024-Update
Cre10.g422050 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
GRMZM2G122848 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G157855 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G164358 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.04G251600 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Glyma.10G286700 No alias COP1-interacting protein 8 0.03 Orthogroups_2024-Update
Glyma.17G108900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G002870.3 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G051760.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g09820 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g26420 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g43740 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10428335g0020 No alias (at3g19950 : 167.0) RING/U-box superfamily protein;... 0.07 Orthogroups_2024-Update
MA_219769g0010 No alias (at5g20910 : 155.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_281830g0010 No alias (at5g08139 : 89.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_77269g0010 No alias (at3g46620 : 139.0) zinc finger (C3HC4-type RING finger)... 0.02 Orthogroups_2024-Update
MA_79051g0010 No alias (at3g19950 : 171.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_816375g0010 No alias (at2g40830 : 158.0) Encodes a putative RING-H2 finger... 0.02 Orthogroups_2024-Update
Mp7g04520.1 No alias no hits & (original description: none) 0.01 Orthogroups_2024-Update
PSME_00026521-RA No alias (at3g19950 : 152.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G103900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.002G083001 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.03 Orthogroups_2024-Update
Potri.005G062400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G168300 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Potri.012G065300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G054700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G190900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc02g065650 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g114680 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G08139.1) 0.04 Orthogroups_2024-Update
Solyc08g067290 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G20910.1) 0.05 Orthogroups_2024-Update
Solyc10g045180 No alias E3 ubiquitin-protein ligase (AHRD V3.3 --* A0A0F7G5V7_9ROSI) 0.06 Orthogroups_2024-Update
Solyc12g008480 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G60360.1) 0.03 Orthogroups_2024-Update
Sopen01g012080 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen02g015860 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g029300 No alias Ring finger domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0002682 regulation of immune system process IEP Predicted GO
BP GO:0002831 regulation of response to biotic stimulus IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010112 regulation of systemic acquired resistance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0031347 regulation of defense response IEP Predicted GO
BP GO:0032101 regulation of response to external stimulus IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0043900 regulation of multi-organism process IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0045088 regulation of innate immune response IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0050776 regulation of immune response IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 167 211
No external refs found!