1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G169900.1

Sobic.005G169900.1


Description : Unknown function


Gene families : OG_42_0006567 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006567_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G169900.1
Cluster HCAA Clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
180500 No alias Methylthiotransferase 0.02 Orthogroups_2024-Update
Bradi4g14840 No alias Methylthiotransferase 0.08 Orthogroups_2024-Update
Glyma.01G169900 No alias Methylthiotransferase 0.03 Orthogroups_2024-Update
Glyma.11G073400 No alias Methylthiotransferase 0.03 Orthogroups_2024-Update
Mp3g13110.1 No alias CDK5RAP1-like protein OS=Oryza sativa subsp. japonica... 0.02 Orthogroups_2024-Update
Pp1s25_71V6 No alias cdk5 regulatory subunit associated protein 1 0.06 Orthogroups_2024-Update
Seita.8G170600.1 No alias Unknown function 0.09 Orthogroups_2024-Update
Sopen02g029420 No alias Radical SAM superfamily 0.03 Orthogroups_2024-Update
evm.model.tig00020552.3 No alias (at4g36390 : 216.0) Methylthiotransferase; FUNCTIONS IN:... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA 16Dec
MF GO:0035596 methylthiotransferase activity IEA 16Dec
MF GO:0051536 iron-sulfur cluster binding IEA 16Dec
MF GO:0051539 4 iron, 4 sulfur cluster binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005381 iron ion transmembrane transporter activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006826 iron ion transport IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034755 iron ion transmembrane transport IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR007197 rSAM 316 512
IPR002792 TRAM_dom 566 640
IPR013848 Methylthiotransferase_N 156 268
No external refs found!