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  5. Sobic.005G175100.1

Sobic.005G175100.1


Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking


Gene families : OG_42_0001585 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G175100.1
Cluster HCAA Clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
267628 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
GRMZM2G403636 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 Orthogroups_2024-Update
HORVU5Hr1G109340.3 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.04 Orthogroups_2024-Update
MA_137324g0010 No alias (at2g42520 : 769.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update
PSME_00036706-RA No alias (at2g42520 : 771.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update
PSME_00037049-RA No alias (at3g58570 : 405.0) P-loop containing nucleoside... 0.03 Orthogroups_2024-Update
Potri.001G007900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 Orthogroups_2024-Update
Potri.003G217800 No alias P-loop containing nucleoside triphosphate hydrolases... 0.06 Orthogroups_2024-Update
Pp1s163_136V6 No alias No description available 0.04 Orthogroups_2024-Update
Pp1s48_51V6 No alias F14N22.21; DEAD box RNA helicase, putative [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.9G047600.1 No alias sRNA cargo-loading helicase *(RH11/37) of extracellular... 0.05 Orthogroups_2024-Update
evm.model.tig00020544.5 No alias (at3g58570 : 468.0) P-loop containing nucleoside... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0004743 pyruvate kinase activity IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
MF GO:0030955 potassium ion binding IEP Predicted GO
MF GO:0031420 alkali metal ion binding IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 176 362
IPR001650 Helicase_C 397 510
No external refs found!