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  5. Sobic.005G208900.1

Sobic.005G208900.1


Description : RBR-Ariadne-class E3 ubiquitin ligase


Gene families : OG_42_0000347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000347_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G208900.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Brara.C01626.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G00341.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.J00404.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Mp2g15500.1 No alias RBR-Ariadne-class E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Potri.002G131300 No alias IBR domain-containing protein 0.04 Orthogroups_2024-Update
Sobic.005G210000.1 No alias RBR-Ariadne-class E3 ubiquitin ligase & component... 0.03 Orthogroups_2024-Update
Solyc12g089000 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT4G34370.1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002867 IBR_dom 306 370
IPR002867 IBR_dom 394 437
No external refs found!