Sobic.005G229300.1

Description : component *(uS2) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001668_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.005G229300.1
Cluster	HCAA Clusters: Cluster_174

Target	Alias	Description	ECC score	Gene Family Method
36118	No alias	40s ribosomal protein SA	0.02	Orthogroups_2024-Update
Bradi1g20880	No alias	40s ribosomal protein SA B	0.05	Orthogroups_2024-Update
Bradi1g23780	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
Bradi1g60310	No alias	40s ribosomal protein SA B	0.06	Orthogroups_2024-Update
Bradi1g72480	No alias	40s ribosomal protein SA B	0.06	Orthogroups_2024-Update
Brara.B02024.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Brara.D01465.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.G02358.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Brara.G03124.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
GRMZM2G092719	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
GRMZM2G099657	No alias	40s ribosomal protein SA B	0.03	Orthogroups_2024-Update
GRMZM2G126821	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
GRMZM2G159237	No alias	40s ribosomal protein SA B	0.03	Orthogroups_2024-Update
Glyma.07G043800	No alias	40s ribosomal protein SA B	0.03	Orthogroups_2024-Update
Glyma.08G159800	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
Glyma.16G012200	No alias	40s ribosomal protein SA B	0.03	Orthogroups_2024-Update
HORVU2Hr1G030880.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
HORVU4Hr1G077240.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Mp2g26290.1	No alias	component RPSa of SSU proteome	0.03	Orthogroups_2024-Update
Potri.003G071200	No alias	40s ribosomal protein SA B	0.03	Orthogroups_2024-Update
Potri.012G117600	No alias	40s ribosomal protein SA B	0.04	Orthogroups_2024-Update
Potri.015G112900	No alias	40s ribosomal protein SA	0.03	Orthogroups_2024-Update
Pp1s48_103V6	No alias	40s ribosomal protein sa	0.02	Orthogroups_2024-Update
Pp1s59_133V6	No alias	40s ribosomal protein sa	0.02	Orthogroups_2024-Update
Seita.2G389700.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Seita.9G371600.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Seita.9G517100.1	No alias	component *(uS2) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Solyc03g019780	No alias	40S ribosomal protein SA (AHRD V3.3 *** K4BEV0_SOLLC)	0.03	Orthogroups_2024-Update
Solyc06g072120	No alias	40S ribosomal protein SA (AHRD V3.3 *** K4C8T4_SOLLC)	0.04	Orthogroups_2024-Update
Sopen03g029850	No alias	Ribosomal protein S2	0.07	Orthogroups_2024-Update
Sopen06g028410	No alias	Ribosomal protein S2	0.04	Orthogroups_2024-Update
evm.model.contig_4456.25	No alias	(o22518\|rssa_soybn : 282.0) 40S ribosomal protein SA...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003729	mRNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004018	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004827	proline-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006188	IMP biosynthetic process	IEP	Predicted GO
BP	GO:0006310	DNA recombination	IEP	Predicted GO
BP	GO:0006378	mRNA polyadenylation	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008237	metallopeptidase activity	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
MF	GO:0016842	amidine-lyase activity	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Predicted GO
BP	GO:0031123	RNA 3'-end processing	IEP	Predicted GO
BP	GO:0031124	mRNA 3'-end processing	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0043631	RNA polyadenylation	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046040	IMP metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predicted GO
MF	GO:0051540	metal cluster binding	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001865	Ribosomal_S2	122	187
IPR001865	Ribosomal_S2	23	116
IPR032281	40S_SA_C	207	303

External Links

No external refs found!

Sobic.005G229300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation