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  5. Sobic.006G014400.1

Sobic.006G014400.1


Description : pectate lyase & EC_4.2 carbon-oxygen lyase


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G014400.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
A4A49_25471 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
A4A49_32410 No alias putative pectate lyase p59 0.03 Orthogroups_2024-Update
LOC_Os06g05209 No alias pectate lyase precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_101171g0010 No alias (at1g67750 : 487.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_10426822g0020 No alias (at1g67750 : 481.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
MA_10433252g0020 No alias (at1g67750 : 366.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
MA_97947g0010 No alias (at1g67750 : 510.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
PSME_00000524-RA No alias (at4g24780 : 590.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
PSME_00019558-RA No alias (at4g13710 : 625.0) Pectin lyase-like superfamily... 0.04 Orthogroups_2024-Update
PSME_00019824-RA No alias (at1g67750 : 587.0) Pectate lyase family protein;... 0.02 Orthogroups_2024-Update
PSME_00020783-RA No alias (at4g24780 : 500.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00029400-RA No alias (at5g63180 : 504.0) Pectin lyase-like superfamily... 0.07 Orthogroups_2024-Update
PSME_00029499-RA No alias (at5g63180 : 517.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00041064-RA No alias (at1g67750 : 595.0) Pectate lyase family protein;... 0.03 Orthogroups_2024-Update
PSME_00044682-RA No alias (at1g67750 : 551.0) Pectate lyase family protein;... 0.06 Orthogroups_2024-Update
PSME_00048976-RA No alias (at4g24780 : 542.0) Pectin lyase-like superfamily... 0.05 Orthogroups_2024-Update
Potri.001G052300 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G175900 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s173_162V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s1_550V6 No alias Pectate lyase precursor (ZePel) [Zinnia elegans] 0.02 Orthogroups_2024-Update
Pp1s204_112V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s28_242V6 No alias pectate lyase 0.03 Orthogroups_2024-Update
Pp1s355_16V6 No alias pectate lyase 0.04 Orthogroups_2024-Update
Pp1s409_2V6 No alias pectate lyase 0.02 Orthogroups_2024-Update
Pp1s92_84V6 No alias F12A21.12; pectate lyase family protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.4G230900.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0098655 cation transmembrane transport IEP Predicted GO
BP GO:0098660 inorganic ion transmembrane transport IEP Predicted GO
BP GO:0098662 inorganic cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 218 399
No external refs found!