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  5. Sobic.006G014800.1

Sobic.006G014800.1


Description : ABC-B-type transporter *(AMN3) & subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G014800.1
Cluster HCAA Clusters: Cluster_67

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
Bradi5g13617 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Brara.F03156.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
GRMZM2G167658 No alias ATP binding cassette subfamily B19 0.02 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
LOC_Os01g18670 No alias MDR-like ABC transporter, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os01g74470 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g54930 No alias ABC transporter, ATP-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00021941-RA No alias (at2g47000 : 947.0) Multidrug resistance P-glycoprotein... 0.03 Orthogroups_2024-Update
PSME_00030174-RA No alias (at2g47000 : 1538.0) Multidrug resistance ... 0.03 Orthogroups_2024-Update
PSME_00031965-RA No alias (q6yuu5|mdr_orysa : 1268.0) Putative multidrug... 0.02 Orthogroups_2024-Update
Potri.001G139700 No alias P-glycoprotein 2 0.02 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.03 Orthogroups_2024-Update
Sobic.003G267700.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.006G236700.1 No alias auxin efflux transporter *(ABCB19) & subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.007G042600.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.02 Orthogroups_2024-Update
Sopen06g004030 No alias ABC transporter transmembrane region 0.02 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
evm.model.tig00020952.7 No alias (at4g25960 : 162.0) P-glycoprotein 2 (PGP2); FUNCTIONS... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1320 1468
IPR003439 ABC_transporter-like 652 800
IPR011527 ABC1_TM_dom 975 1246
IPR011527 ABC1_TM_dom 312 582
No external refs found!