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  5. Sobic.006G014900.1

Sobic.006G014900.1


Description : substrate adaptor *(NPH3) of CUL3-BTB E3 ubiquitin ligase complex


Gene families : OG_42_0000067 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G014900.1
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
Bradi4g44320 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Brara.E01281.1 No alias phototropin signalling factor *(RPT2) 0.02 Orthogroups_2024-Update
GRMZM2G353024 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G093120.2 No alias substrate adaptor *(NRL) of CUL3-based E3 ubiquitin... 0.05 Orthogroups_2024-Update
MA_10431089g0010 No alias (at3g44820 : 615.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
PSME_00027120-RA No alias (q9lef0|gpx4_mescr : 145.0) Probable phospholipid... 0.03 Orthogroups_2024-Update
PSME_00048851-RA No alias (at1g30440 : 630.0) Phototropic-responsive NPH3 family... 0.04 Orthogroups_2024-Update
Potri.016G090400 No alias Phototropic-responsive NPH3 family protein 0.03 Orthogroups_2024-Update
Sobic.001G096900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc10g047530 No alias Phototropic-responsive NPH3 family protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR027356 NPH3_dom 247 521
No external refs found!