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  5. Sobic.006G018400.1

Sobic.006G018400.1


Description : clade A phosphatase


Gene families : OG_42_0000303 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000303_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G018400.1
Cluster HCAA Clusters: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G094840.4 No alias regulatory phosphatase component *(ABI1/ABI2) of... 0.03 Orthogroups_2024-Update
LOC_Os03g16170 No alias protein phosphatase 2C, putative, expressed 0.03 Orthogroups_2024-Update
Seita.2G177500.1 No alias clade A phosphatase 0.02 Orthogroups_2024-Update
Seita.3G121900.1 No alias regulatory phosphatase component *(ABI1/ABI2) of... 0.03 Orthogroups_2024-Update
Seita.3G139000.1 No alias clade A phosphatase 0.04 Orthogroups_2024-Update
Sopen03g026890 No alias Protein phosphatase 2C 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005544 calcium-dependent phospholipid binding IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 290 430
IPR001932 PPM-type_phosphatase_dom 137 211
No external refs found!