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  5. Sobic.006G027101.1

Sobic.006G027101.1


Description : EC_6.1 ligase forming carbon-oxygen bond


Gene families : OG_42_0005214 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005214_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G027101.1
Cluster HCAA Clusters: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
Kfl00722_0050 kfl00722_0050_v1.1 (at4g10320 : 1428.0) tRNA synthetase class I (I, L, M... 0.02 Orthogroups_2024-Update
evm.model.tig00020904.57 No alias (at4g10320 : 975.0) tRNA synthetase class I (I, L, M and... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA 16Dec
MF GO:0004812 aminoacyl-tRNA ligase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006418 tRNA aminoacylation for protein translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 623 723
IPR002300 aa-tRNA-synth_Ia 15 454
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