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  5. Sobic.006G027500.2

Sobic.006G027500.2


Description : EC_4.2 carbon-oxygen lyase & mono-/sesquiterpene-/diterpene synthase


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G027500.2
Cluster HCAA Clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
412139 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G108609 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G321100 No alias terpene synthase 03 0.05 Orthogroups_2024-Update
PSME_00003483-RA No alias (p93665|dcs1_goshi : 253.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00003535-RA No alias (p59287|cass_ricco : 266.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00007190-RA No alias (at3g25810 : 158.0) Terpenoid cyclases/Protein... 0.04 Orthogroups_2024-Update
PSME_00010279-RA No alias (at4g02780 : 364.0) Catalyzes the conversion of... 0.02 Orthogroups_2024-Update
PSME_00012615-RA No alias (p93665|dcs1_goshi : 220.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00013124-RA No alias (p93665|dcs1_goshi : 234.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
PSME_00018711-RA No alias (p93665|dcs1_goshi : 196.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00025552-RA No alias (p59287|cass_ricco : 251.0) Casbene synthase,... 0.03 Orthogroups_2024-Update
PSME_00028694-RA No alias (p93665|dcs1_goshi : 181.0) (+)-delta-cadinene synthase... 0.03 Orthogroups_2024-Update
PSME_00035829-RA No alias (q40577|5eas_tobac : 197.0) Aristolochene synthase (EC... 0.02 Orthogroups_2024-Update
PSME_00037858-RA No alias (at4g16740 : 161.0) Encodes an (E,E)-alpha-farnesene... 0.02 Orthogroups_2024-Update
PSME_00039853-RA No alias (at4g02780 : 169.0) Catalyzes the conversion of... 0.02 Orthogroups_2024-Update
PSME_00041351-RA No alias (at1g70080 : 113.0) Terpenoid cyclases/Protein... 0.04 Orthogroups_2024-Update
Potri.T001000 No alias terpene synthase-like sequence-1,8-cineole 0.02 Orthogroups_2024-Update
Sobic.002G002300.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
Solyc01g105850 No alias (E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN)%3B... 0.04 Orthogroups_2024-Update
Solyc01g105860 No alias (R)-limonene synthase (AHRD V1 ***- B9T537_RICCO)%3B... 0.06 Orthogroups_2024-Update
Solyc01g105890 No alias Monoterpene synthase 1 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA 16Dec
MF GO:0010333 terpene synthase activity IEA 16Dec
MF GO:0016829 lyase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006417 regulation of translation IEP Predicted GO
BP GO:0009890 negative regulation of biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010608 posttranscriptional regulation of gene expression IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0017148 negative regulation of translation IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0030597 RNA glycosylase activity IEP Predicted GO
MF GO:0030598 rRNA N-glycosylase activity IEP Predicted GO
BP GO:0031324 negative regulation of cellular metabolic process IEP Predicted GO
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032268 regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Predicted GO
BP GO:0034248 regulation of cellular amide metabolic process IEP Predicted GO
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
BP GO:0051248 negative regulation of protein metabolic process IEP Predicted GO
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predicted GO
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005630 Terpene_synthase_metal-bd 261 525
IPR001906 Terpene_synth_N 51 230
No external refs found!