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  5. Sobic.006G054200.1

Sobic.006G054200.1


Description : subfamily ABCC transporter


Gene families : OG_42_0000076 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G054200.1
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
94 No alias multidrug resistance-associated protein 12 0.02 Orthogroups_2024-Update
Bradi1g37840 No alias multidrug resistance-associated protein 6 0.03 Orthogroups_2024-Update
GRMZM2G084181 No alias multidrug resistance-associated protein 2 0.03 Orthogroups_2024-Update
GRMZM2G111903 No alias multidrug resistance-associated protein 14 0.02 Orthogroups_2024-Update
Glyma.04G126500 No alias multidrug resistance-associated protein 2 0.04 Orthogroups_2024-Update
Glyma.16G172500 No alias multidrug resistance-associated protein 14 0.03 Orthogroups_2024-Update
Glyma.18G080900 No alias multidrug resistance-associated protein 3 0.04 Orthogroups_2024-Update
Glyma.19G169000 No alias multidrug resistance-associated protein 5 0.02 Orthogroups_2024-Update
HORVU4Hr1G084290.1 No alias subfamily ABCC transporter 0.06 Orthogroups_2024-Update
Kfl00085_0340 kfl00085_0340_v1.1 (at2g34660 : 585.0) encodes a multidrug... 0.01 Orthogroups_2024-Update
Kfl00342_0130 kfl00342_0130_v1.1 (at1g30420 : 405.0) member of MRP subfamily; multidrug... 0.02 Orthogroups_2024-Update
MA_8849g0010 No alias (at3g13080 : 1497.0) encodes an ATP-dependent MRP-like... 0.03 Orthogroups_2024-Update
Mp4g15590.1 No alias subfamily ABCC transporter 0.02 Orthogroups_2024-Update
Pp1s342_31V6 No alias multidrug resistance protein abc transporter family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
BP GO:0006487 protein N-linked glycosylation IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0006658 phosphatidylserine metabolic process IEP Predicted GO
BP GO:0006659 phosphatidylserine biosynthetic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
BP GO:0045017 glycerolipid biosynthetic process IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 295 558
IPR011527 ABC1_TM_dom 923 1166
IPR003439 ABC_transporter-like 623 757
IPR003439 ABC_transporter-like 1256 1404
No external refs found!