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  5. Sobic.006G058732.1

Sobic.006G058732.1


Description : subgroup ERF-X transcription factor


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G058732.1
Cluster HCAA Clusters: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
A4A49_07545 No alias pathogenesis-related genes transcriptional activator pti6 0.02 Orthogroups_2024-Update
A4A49_18156 No alias ethylene-responsive transcription factor shine 3 0.03 Orthogroups_2024-Update
A4A49_21212 No alias ethylene-responsive transcription factor erf008 0.03 Orthogroups_2024-Update
Bradi2g22505 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g35560 No alias related to AP2 4 0.02 Orthogroups_2024-Update
Brara.B00844.1 No alias transcription factor *(ERN1) & subgroup ERF-V... 0.02 Orthogroups_2024-Update
Brara.B02236.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Brara.C01398.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.02 Orthogroups_2024-Update
Brara.G00808.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Brara.J00210.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Brara.J02098.1 No alias subgroup ERF-X transcription factor 0.04 Orthogroups_2024-Update
Brara.K00687.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G434203 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.02G236800 No alias cytokinin response factor 4 0.02 Orthogroups_2024-Update
Glyma.02G267400 No alias ethylene responsive element binding factor 3 0.02 Orthogroups_2024-Update
Glyma.03G112100 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Glyma.09G147200 No alias C-repeat-binding factor 4 0.02 Orthogroups_2024-Update
Glyma.12G103100 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Glyma.16G079600 No alias cytokinin response factor 4 0.03 Orthogroups_2024-Update
Glyma.17G216100 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Glyma.20G070000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G016540.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU0Hr1G036300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G088790.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
MA_10433310g0010 No alias (at5g11590 : 108.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
MA_10435354g0010 No alias (at1g19210 : 88.6) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_121581g0010 No alias (at1g22190 : 103.0) Integrase-type DNA-binding... 0.06 Orthogroups_2024-Update
Potri.001G157100 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G087200 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G053700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G087800 No alias related to AP2 11 0.02 Orthogroups_2024-Update
Pp1s127_75V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s132_34V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Pp1s13_457V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s276_50V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s276_72V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s296_32V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Pp1s41_212V6 No alias ap2 erf domain-containing transcription factor 0.01 Orthogroups_2024-Update
Pp1s90_184V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.1G259000.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Seita.3G272600.1 No alias transcription factor component *(HRE/RAP2.12) of... 0.04 Orthogroups_2024-Update
Seita.9G509400.1 No alias subgroup ERF-I transcription factor 0.05 Orthogroups_2024-Update
Sobic.004G100700.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G071700.1 No alias subgroup ERF-VII transcription factor & transcription... 0.04 Orthogroups_2024-Update
Sobic.010G240900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc03g026270 No alias CBF 0.03 Orthogroups_2024-Update
Solyc04g078640 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.06 Orthogroups_2024-Update
Sopen03g005150 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen04g002250 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen05g005260 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen05g029570 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen10g028020 No alias AP2 domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 260 309
No external refs found!