Sobic.006G075400.2

Description : E3 ubiquitin ligase

Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.006G075400.2
Cluster	HCAA Clusters: Cluster_20

Target	Alias	Description	ECC score	Gene Family Method
A4A49_34426	No alias	e3 ubiquitin-protein ligase pub24	0.03	Orthogroups_2024-Update
Brara.E00873.1	No alias	E3 ubiquitin ligase	0.04	Orthogroups_2024-Update
Glyma.09G172100	No alias	CYS, MET, PRO, and GLY protein 1	0.04	Orthogroups_2024-Update
Glyma.12G095100	No alias	plant U-box 23	0.03	Orthogroups_2024-Update
LOC_Os02g46500	No alias	U-box, putative, expressed	0.02	Orthogroups_2024-Update
MA_10432179g0010	No alias	(at3g52450 : 121.0) Encodes a cytoplasmically localized...	0.03	Orthogroups_2024-Update
PSME_00043995-RA	No alias	(at1g49780 : 227.0) plant U-box 26 (PUB26); FUNCTIONS...	0.03	Orthogroups_2024-Update
Potri.009G016200	No alias	plant U-box 23	0.04	Orthogroups_2024-Update
Potri.017G135000	No alias	ARM repeat superfamily protein	0.02	Orthogroups_2024-Update
Pp1s109_251V6	No alias	u-box domain-containing protein	0.03	Orthogroups_2024-Update
Solyc01g009330	No alias	U-box domain-containing family protein (AHRD V3.3 ***...	0.03	Orthogroups_2024-Update
Solyc05g056500	No alias	U-box domain-containing protein 25 (AHRD V3.3 *** W9QUC2_9ROSA)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	16Dec
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	16Dec
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	Predicted GO
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
MF	GO:0008134	transcription factor binding	IEP	Predicted GO
MF	GO:0008238	exopeptidase activity	IEP	Predicted GO
MF	GO:0070008	serine-type exopeptidase activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	85

External Links

No external refs found!