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  5. Sobic.006G085900.1

Sobic.006G085900.1


Description : Unknown function


Gene families : OG_42_0009881 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009881_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G085900.1
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Glyma.04G243400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G076380.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g35650 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00019892-RA No alias (at3g26540 : 467.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Seita.7G103700.1 No alias Unknown function 0.1 Orthogroups_2024-Update
Sopen04g026220 No alias PPR repeat 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Predicted GO
BP GO:0000077 DNA damage checkpoint IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031570 DNA integrity checkpoint IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045786 negative regulation of cell cycle IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 351 377
IPR002885 Pentatricopeptide_repeat 320 349
IPR002885 Pentatricopeptide_repeat 454 481
IPR002885 Pentatricopeptide_repeat 119 148
IPR002885 Pentatricopeptide_repeat 292 314
IPR002885 Pentatricopeptide_repeat 219 249
IPR002885 Pentatricopeptide_repeat 552 591
No external refs found!