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  5. Sobic.006G101600.1

Sobic.006G101600.1


Description : cryptochrome photoreceptor *(CRY)


Gene families : OG_42_0001675 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001675_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G101600.1
Cluster HCAA Clusters: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
Bradi3g46590 No alias cryptochrome 1 0.03 Orthogroups_2024-Update
Brara.I02459.1 No alias cryptochrome photoreceptor *(CRY) 0.03 Orthogroups_2024-Update
GRMZM2G024739 No alias cryptochrome 1 0.03 Orthogroups_2024-Update
GRMZM2G104262 No alias cryptochrome 1 0.03 Orthogroups_2024-Update
Glyma.10G180600 No alias cryptochrome 2 0.02 Orthogroups_2024-Update
Glyma.13G089200 No alias cryptochrome 1 0.04 Orthogroups_2024-Update
Glyma.14G174200 No alias cryptochrome 1 0.03 Orthogroups_2024-Update
LOC_Os02g41550 No alias FAD binding domain of DNA photolyase domain containing... 0.03 Orthogroups_2024-Update
Seita.1G204600.1 No alias cryptochrome photoreceptor *(CRY) 0.05 Orthogroups_2024-Update
Seita.7G119400.1 No alias cryptochrome photoreceptor *(CRY) 0.06 Orthogroups_2024-Update
Solyc12g057040 No alias cryptochrome 1b 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR006050 DNA_photolyase_N 17 180
IPR020978 Cryptochrome_C 521 640
IPR005101 Cryptochr/Photolyase_FAD-bd 295 493
No external refs found!