1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.006G105500.1

Sobic.006G105500.1


Description : EC_3.1 hydrolase acting on ester bond & pectin methylesterase


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G105500.1
Cluster HCAA Clusters: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
266995 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
At2g45220 No alias Probable pectinesterase/pectinesterase inhibitor 17... 0.03 Orthogroups_2024-Update
Brara.C02291.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Brara.E00487.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G025182 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
GRMZM2G125356 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
GRMZM2G321870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.03G029400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.06G319000 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Glyma.07G024200 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.07G024300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.09G076100 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
Glyma.10G150700 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.01 Orthogroups_2024-Update
Glyma.13G115300 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Orthogroups_2024-Update
MA_10434031g0010 No alias (o04886|pme1_citsi : 471.0) Pectinesterase-1 precursor... 0.03 Orthogroups_2024-Update
Mp8g00060.1 No alias pectin methylesterase 0.03 Orthogroups_2024-Update
Potri.001G162600 No alias pectin methylesterase 3 0.04 Orthogroups_2024-Update
Potri.011G025400 No alias methylesterase PCR A 0.02 Orthogroups_2024-Update
Potri.011G135000 No alias methylesterase PCR A 0.03 Orthogroups_2024-Update
Seita.2G441400.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.04 Orthogroups_2024-Update
Seita.6G168500.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.04 Orthogroups_2024-Update
Seita.7G123200.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.04 Orthogroups_2024-Update
Solyc02g080220 No alias Pectinesterase (AHRD V3.3 *** K4B9P3_SOLLC) 0.02 Orthogroups_2024-Update
Sopen01g036780 No alias Pectinesterase 0.02 Orthogroups_2024-Update
Sopen03g041400 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA 16Dec
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
MF GO:0030570 pectate lyase activity IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 251 546
IPR006501 Pectinesterase_inhib_dom 50 196
No external refs found!