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  5. Sobic.006G105800.1

Sobic.006G105800.1


Description : organellar tyrosine-tRNA ligase


Gene families : OG_42_0005753 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005753_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G105800.1
Cluster HCAA Clusters: Cluster_223

Target Alias Description ECC score Gene Family Method Actions
Glyma.14G202100 No alias Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial 0.03 Orthogroups_2024-Update
evm.model.tig00001388.17 No alias (at3g02660 : 268.0) EMBRYO DEFECTIVE 2768 (emb2768);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
MF GO:0004812 aminoacyl-tRNA ligase activity IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006418 tRNA aminoacylation for protein translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002305 aa-tRNA-synth_Ic 78 395
IPR002942 S4_RNA-bd 431 476
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