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  5. Sobic.006G110200.2

Sobic.006G110200.2


Description : plastidial RNA splicing factor *(CFM2)


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G110200.2
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
120007 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
412905 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
At3g01370 No alias CRM-domain containing factor CFM2, chloroplastic... 0.02 Orthogroups_2024-Update
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.05 Orthogroups_2024-Update
Bradi4g28800 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Bradi5g12660 No alias CRM family member 2 0.03 Orthogroups_2024-Update
Brara.E01957.1 No alias plastidial RNA splicing factor *(CFM3) 0.02 Orthogroups_2024-Update
Brara.E03650.1 No alias plastidial RNA splicing factor *(CFM2) 0.03 Orthogroups_2024-Update
GRMZM2G078412 No alias ortholog of maize chloroplast splicing factor CRS1 0.02 Orthogroups_2024-Update
GRMZM2G094072 No alias CRM family member 2 0.02 Orthogroups_2024-Update
GRMZM5G813259 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Kfl00095_0160 kfl00095_0160_v1.1 (at3g18390 : 154.0) embryo defective 1865 (EMB1865);... 0.02 Orthogroups_2024-Update
LOC_Os04g39060 No alias CRS1/YhbY domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47850 No alias chloroplastic group IIA intron splicing facilitator... 0.03 Orthogroups_2024-Update
Mp3g06280.1 No alias CRM-domain containing factor CFM3,... 0.03 Orthogroups_2024-Update
Potri.006G149000 No alias CRS1 / YhbY (CRM) domain-containing protein 0.05 Orthogroups_2024-Update
Potri.012G056100 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Pp1s142_94V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.2G185900.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.3G156100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G127900.1 No alias plastidial RNA splicing factor *(CFM2) 0.1 Orthogroups_2024-Update
Seita.8G170300.1 No alias plastidial RNA splicing factor *(CFM3) 0.04 Orthogroups_2024-Update
Solyc02g087250 No alias Chloroplastic group IIA intron splicing facilitator... 0.05 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.03 Orthogroups_2024-Update
Sopen02g031990 No alias CRS1 / YhbY (CRM) domain 0.06 Orthogroups_2024-Update
Sopen03g038300 No alias CRS1 / YhbY (CRM) domain 0.04 Orthogroups_2024-Update
Sopen07g019080 No alias CRS1 / YhbY (CRM) domain 0.06 Orthogroups_2024-Update
Sopen09g032270 No alias CRS1 / YhbY (CRM) domain 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 915 1001
IPR001890 RNA-binding_CRM 438 526
IPR001890 RNA-binding_CRM 145 228
IPR001890 RNA-binding_CRM 638 724
No external refs found!