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  5. Sobic.006G114100.4

Sobic.006G114100.4


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G114100.4
Cluster HCAA Clusters: Cluster_246

Target Alias Description ECC score Gene Family Method Actions
Bradi1g35680 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Bradi2g04847 No alias pleiotropic drug resistance 4 0.03 Orthogroups_2024-Update
Bradi2g43120 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Bradi2g43150 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
GRMZM2G477872 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
GRMZM5G874955 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Glyma.07G033500 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.14G127800 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
HORVU6Hr1G036800.21 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
HORVU7Hr1G016870.3 No alias subfamily ABCG transporter 0.05 Orthogroups_2024-Update
HORVU7Hr1G092510.2 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Kfl00616_0050 kfl00616_0050_v1.1 (at1g59870 : 1348.0) ATP binding cassette transporter.... 0.02 Orthogroups_2024-Update
MA_300423g0010 No alias (q5z9s8|pdr12_orysa : 452.0) Pleiotropic drug resistance... 0.03 Orthogroups_2024-Update
PSME_00001267-RA No alias (q5z9s8|pdr12_orysa : 1556.0) Pleiotropic drug... 0.03 Orthogroups_2024-Update
Potri.001G175700 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Pp1s12_29V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Pp1s15_135V6 No alias atp-binding cassette 0.03 Orthogroups_2024-Update
Seita.5G115400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G190900.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
Sobic.010G196900.1 No alias subfamily ABCG transporter 0.04 Orthogroups_2024-Update
evm.model.tig00021489.3 No alias (at3g21090 : 172.0) ABC-2 type transporter family... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 688 837
IPR003439 ABC_transporter-like 2 172
IPR013525 ABC_2_trans 325 537
IPR013525 ABC_2_trans 982 1195
IPR013581 PDR_assoc 542 605
No external refs found!