Description : mitochondrial transcript stability factor *(MTSF1)
Gene families : OG_42_0009347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009347_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.006G128400.1 | |
Cluster | HCAA Clusters: Cluster_164 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi5g14060 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.J00461.1 | No alias | mitochondrial transcript stability factor *(MTSF1) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G021710 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
HORVU2Hr1G084600.11 | No alias | mitochondrial transcript stability factor *(MTSF1) | 0.06 | Orthogroups_2024-Update | |
Seita.7G146100.1 | No alias | mitochondrial transcript stability factor *(MTSF1) | 0.21 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003697 | single-stranded DNA binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
CC | GO:0005730 | nucleolus | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008134 | transcription factor binding | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
CC | GO:0030684 | preribosome | IEP | Predicted GO |
CC | GO:0032040 | small-subunit processome | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
CC | GO:0044445 | cytosolic part | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
CC | GO:0090730 | Las1 complex | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
CC | GO:1902555 | endoribonuclease complex | IEP | Predicted GO |
CC | GO:1902911 | protein kinase complex | IEP | Predicted GO |
CC | GO:1905348 | endonuclease complex | IEP | Predicted GO |
CC | GO:1905354 | exoribonuclease complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 331 | 389 |
IPR002885 | Pentatricopeptide_repeat | 894 | 923 |
IPR002885 | Pentatricopeptide_repeat | 209 | 238 |
IPR002885 | Pentatricopeptide_repeat | 856 | 882 |
IPR002885 | Pentatricopeptide_repeat | 524 | 572 |
IPR002885 | Pentatricopeptide_repeat | 714 | 762 |
IPR002885 | Pentatricopeptide_repeat | 644 | 692 |
IPR002885 | Pentatricopeptide_repeat | 461 | 502 |
IPR002885 | Pentatricopeptide_repeat | 273 | 320 |
IPR002885 | Pentatricopeptide_repeat | 607 | 637 |
IPR002885 | Pentatricopeptide_repeat | 780 | 813 |
No external refs found! |