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  5. Sobic.006G132400.1

Sobic.006G132400.1


Description : Unknown function


Gene families : OG_42_0000525 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000525_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G132400.1
Cluster HCAA Clusters: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
At2g43570 No alias CHI [Source:UniProtKB/TrEMBL;Acc:A0A178W3M3] 0.04 Orthogroups_2024-Update
Bradi5g14430 No alias homolog of carrot EP3-3 chitinase 0.08 Orthogroups_2024-Update
MA_10430424g0010 No alias (p29022|chia_maize : 207.0) Endochitinase A precursor... 0.04 Orthogroups_2024-Update
MA_36141g0010 No alias (at3g54420 : 245.0) encodes an EP3 chitinase that is... 0.03 Orthogroups_2024-Update
Mp5g02050.1 No alias Endochitinase 1 OS=Gossypium hirsutum... 0.04 Orthogroups_2024-Update
PSME_00029190-RA No alias (p29022|chia_maize : 256.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
PSME_00029419-RA No alias (at3g54420 : 244.0) encodes an EP3 chitinase that is... 0.04 Orthogroups_2024-Update
PSME_00030955-RA No alias (at3g54420 : 243.0) encodes an EP3 chitinase that is... 0.02 Orthogroups_2024-Update
PSME_00037636-RA No alias (p29022|chia_maize : 228.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
PSME_00039570-RA No alias (p29023|chib_maize : 253.0) Endochitinase B precursor... 0.03 Orthogroups_2024-Update
PSME_00046774-RA No alias (at3g54420 : 162.0) encodes an EP3 chitinase that is... 0.06 Orthogroups_2024-Update
PSME_00050706-RA No alias (p29022|chia_maize : 237.0) Endochitinase A precursor... 0.03 Orthogroups_2024-Update
PSME_00050767-RA No alias (p29022|chia_maize : 240.0) Endochitinase A precursor... 0.05 Orthogroups_2024-Update
PSME_00051432-RA No alias (at3g54420 : 213.0) encodes an EP3 chitinase that is... 0.05 Orthogroups_2024-Update
Seita.7G150200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G150500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G150600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.006G132500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen06g018430 No alias Chitinase class I 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEA 16Dec
BP GO:0006032 chitin catabolic process IEA 16Dec
MF GO:0008061 chitin binding IEA 16Dec
BP GO:0016998 cell wall macromolecule catabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000726 Glyco_hydro_19_cat 80 218
IPR000726 Glyco_hydro_19_cat 226 273
IPR001002 Chitin-bd_1 29 62
No external refs found!