Sobic.006G138100.1

Description : component *(uS17) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.006G138100.1
Cluster	HCAA Clusters: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
268639	No alias	Nucleic acid-binding, OB-fold-like protein	0.09	Orthogroups_2024-Update
A4A49_60485	No alias	40s ribosomal protein s11	0.13	Orthogroups_2024-Update
At3g48930	No alias	40S ribosomal protein S11-1...	0.07	Orthogroups_2024-Update
At5g23740	No alias	RPS11-BETA [Source:UniProtKB/TrEMBL;Acc:A0A178UPD3]	0.02	Orthogroups_2024-Update
Bradi3g48600	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	Orthogroups_2024-Update
Bradi5g21630	No alias	Nucleic acid-binding, OB-fold-like protein	0.18	Orthogroups_2024-Update
Brara.A02200.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Brara.B03705.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.F01642.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.2	Orthogroups_2024-Update
Brara.F02607.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.18	Orthogroups_2024-Update
Brara.I00599.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Cre12.g514500	No alias	Nucleic acid-binding, OB-fold-like protein	0.15	Orthogroups_2024-Update
GRMZM2G019325	No alias	ribosomal protein S11-beta	0.21	Orthogroups_2024-Update
GRMZM2G044800	No alias	ribosomal protein S11-beta	0.12	Orthogroups_2024-Update
Glyma.09G094200	No alias	ribosomal protein S11-beta	0.07	Orthogroups_2024-Update
Glyma.09G094300	No alias	ribosomal protein S11-beta	0.03	Orthogroups_2024-Update
Glyma.13G165200	No alias	ribosomal protein S11-beta	0.14	Orthogroups_2024-Update
HORVU2Hr1G099230.8	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.16	Orthogroups_2024-Update
HORVU6Hr1G056610.7	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
Kfl00435_0080	kfl00435_0080_v1.1	(p17093\|rs11_soybn : 243.0) 40S ribosomal protein S11 -...	0.09	Orthogroups_2024-Update
LOC_Os04g52361	No alias	ribosomal protein S17, putative, expressed	0.08	Orthogroups_2024-Update
MA_19350g0010	No alias	(at3g48930 : 247.0) embryo defective 1080 (EMB1080);...	0.1	Orthogroups_2024-Update
Mp6g10500.1	No alias	component RPS11 of SSU proteome	0.05	Orthogroups_2024-Update
Potri.002G140400	No alias	ribosomal protein S11-beta	0.08	Orthogroups_2024-Update
Potri.014G053300	No alias	ribosomal protein S11-beta	0.12	Orthogroups_2024-Update
Potri.018G115400	No alias	ribosomal protein S11-beta	0.06	Orthogroups_2024-Update
Pp1s21_269V6	No alias	40s ribosomal protein s11	0.21	Orthogroups_2024-Update
Pp1s30_89V6	No alias	40s ribosomal protein s11	0.1	Orthogroups_2024-Update
Pp1s51_307V6	No alias	40s ribosomal protein s11	0.11	Orthogroups_2024-Update
Pp1s79_58V6	No alias	40s ribosomal protein s11	0.14	Orthogroups_2024-Update
Seita.1G231100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.18	Orthogroups_2024-Update
Seita.7G157100.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Seita.7G234800.1	No alias	component *(uS17) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Solyc06g073790	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.18	Orthogroups_2024-Update
Solyc06g073800	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.16	Orthogroups_2024-Update
Solyc12g042080	No alias	40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU)	0.15	Orthogroups_2024-Update
Sopen06g030190	No alias	Ribosomal protein S17	0.23	Orthogroups_2024-Update
Sopen12g021180	No alias	Ribosomal protein S17	0.17	Orthogroups_2024-Update
evm.model.contig_3727.5	No alias	(at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like...	0.28	Orthogroups_2024-Update
evm.model.tig00000551.22	No alias	(p17093\|rs11_soybn : 211.0) 40S ribosomal protein S11 -...	0.17	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005732	small nucleolar ribonucleoprotein complex	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
CC	GO:0034457	Mpp10 complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044452	nucleolar part	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
MF	GO:0070037	rRNA (pseudouridine) methyltransferase activity	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
BP	GO:0071840	cellular component organization or biogenesis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000266	Ribosomal_S17/S11	74	142
IPR032440	Ribosomal_S11_N	4	72

External Links

No external refs found!

Sobic.006G138100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation