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  5. Sobic.006G144700.1

Sobic.006G144700.1


Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer


Gene families : OG_42_0000927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000927_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G144700.1
Cluster HCAA Clusters: Cluster_62

Target Alias Description ECC score Gene Family Method Actions
Kfl00116_0090 kfl00116_0090_v1.... (at1g04020 : 184.0) Encodes a protein containing two... 0.02 Orthogroups_2024-Update
MA_187851g0010 No alias (at4g21070 : 105.0) Encodes AtBRCA1, an ortholog of the... 0.03 Orthogroups_2024-Update
Solyc06g008210 No alias breast cancer associated RING 1 (AHRD V3.3 *** AT1G04020.1) 0.02 Orthogroups_2024-Update
Sopen06g003070 No alias BRCA1 C Terminus (BRCT) domain 0.04 Orthogroups_2024-Update
Sopen08g008190 No alias BRCA1 C Terminus (BRCT) domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005375 copper ion transmembrane transporter activity IEP Predicted GO
BP GO:0006825 copper ion transport IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0032392 DNA geometric change IEP Predicted GO
BP GO:0032508 DNA duplex unwinding IEP Predicted GO
BP GO:0035434 copper ion transmembrane transport IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 24 61
IPR001357 BRCT_dom 439 489
No external refs found!