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  5. Sobic.006G167800.3

Sobic.006G167800.3


Description : subgroup ERF-IX transcription factor


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G167800.3
Cluster HCAA Clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
At4g34410 No alias Ethylene-responsive transcription factor ERF109... 0.03 Orthogroups_2024-Update
Bradi3g50620 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g17610 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Brara.A00159.1 No alias subgroup ERF-II-DEAR transcription factor 0.03 Orthogroups_2024-Update
Brara.A01860.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Brara.B01460.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.03 Orthogroups_2024-Update
Brara.D02449.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G148333 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G173579 No alias Rho GTPase activating protein with PAK-box/P21-Rho-binding domain 0.03 Orthogroups_2024-Update
Glyma.02G066200 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.03G138900 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G062100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G203100 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G166700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G240100 No alias related to AP2 1 0.03 Orthogroups_2024-Update
Glyma.18G262800 No alias related to AP2 11 0.03 Orthogroups_2024-Update
HORVU2Hr1G037540.1 No alias transcription factor *(ERN1) & subgroup ERF-V... 0.03 Orthogroups_2024-Update
HORVU4Hr1G077360.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G036590.2 No alias subgroup ERF-X transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G080790.1 No alias subgroup ERF-VII transcription factor & transcription... 0.06 Orthogroups_2024-Update
HORVU6Hr1G060140.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
LOC_Os01g10370 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g54890 No alias ethylene-responsive transcription factor 2, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00004891-RA No alias (at1g74930 : 122.0) encodes a member of the DREB... 0.05 Orthogroups_2024-Update
Potri.002G039300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G077700 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G186400 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.012G032900 No alias cytokinin response factor 4 0.02 Orthogroups_2024-Update
Potri.014G046900 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Potri.014G047000 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
Pp1s132_34V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Pp1s13_457V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s276_72V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Seita.1G271000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G156200.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Seita.2G280400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G296900.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Solyc03g118190 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc05g052030 No alias ethylene response factor 4 0.03 Orthogroups_2024-Update
Sopen02g037700 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen06g018310 No alias AP2 domain 0.04 Orthogroups_2024-Update
Sopen06g022520 No alias AP2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 137 187
No external refs found!