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  5. Sobic.006G167900.1

Sobic.006G167900.1


Description : subgroup ERF-IX transcription factor


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G167900.1
Cluster HCAA Clusters: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
A4A49_03202 No alias ethylene-responsive transcription factor erf053 0.02 Orthogroups_2024-Update
A4A49_06467 No alias ethylene-responsive transcription factor crf4 0.03 Orthogroups_2024-Update
A4A49_16905 No alias ethylene-responsive transcription factor 5 0.02 Orthogroups_2024-Update
At2g36450 No alias Ethylene-responsive transcription factor ERF024... 0.03 Orthogroups_2024-Update
Bradi4g29010 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.F01050.1 No alias cutin and suberin biosynthesis transcription factor... 0.02 Orthogroups_2024-Update
Brara.G02253.1 No alias subgroup ERF-II transcription factor *(ERF16/17/18) 0.02 Orthogroups_2024-Update
Brara.J00058.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G069082 No alias C-repeat-binding factor 4 0.02 Orthogroups_2024-Update
Glyma.05G186700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G028300 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G236600 No alias ERF domain protein 12 0.05 Orthogroups_2024-Update
Glyma.15G077100 No alias erf domain protein 9 0.03 Orthogroups_2024-Update
Glyma.18G252300 No alias ethylene-responsive element binding factor 13 0.03 Orthogroups_2024-Update
LOC_Os03g64260 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g09717 No alias ethylene-responsive transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g09810 No alias ethylene-responsive transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os08g36920 No alias AP2 domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g11480 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g39810 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g38000 No alias dehydration-responsive element-binding protein,... 0.03 Orthogroups_2024-Update
MA_10431529g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
MA_203191g0010 No alias (at1g28360 : 85.9) encodes a member of the ERF (ethylene... 0.02 Orthogroups_2024-Update
MA_922309g0010 No alias (at4g17500 : 92.0) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
PSME_00022946-RA No alias (at5g61890 : 105.0) encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00037532-RA No alias (at5g61890 : 129.0) encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00037533-RA No alias (at5g61890 : 108.0) encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00039617-RA No alias (at4g17500 : 120.0) Encodes a member of the ERF... 0.05 Orthogroups_2024-Update
PSME_00051455-RA No alias (at5g21960 : 102.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
PSME_00056166-RA No alias (at5g11590 : 103.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
Potri.001G315300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G080600 No alias ethylene responsive element binding factor 6 0.02 Orthogroups_2024-Update
Potri.006G054500 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.006G069400 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.008G091300 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.015G136400 No alias C-repeat-binding factor 4 0.03 Orthogroups_2024-Update
Pp1s133_11V6 No alias c-repeat binding factor 4 0.03 Orthogroups_2024-Update
Seita.1G187800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G051200.1 No alias subgroup ERF-V transcription factor 0.03 Orthogroups_2024-Update
Seita.6G181700.1 No alias subgroup ERF-X transcription factor 0.03 Orthogroups_2024-Update
Seita.7G290600.1 No alias subgroup ERF-X transcription factor 0.06 Orthogroups_2024-Update
Solyc05g013540 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g035420 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0010215 cellulose microfibril organization IEP Predicted GO
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
BP GO:0015689 molybdate ion transport IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030198 extracellular matrix organization IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0043062 extracellular structure organization IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 140 190
No external refs found!