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  5. Sobic.006G177200.1

Sobic.006G177200.1


Description : flowering time factor *(FLD) & histone demethylase *(KDM1a/b/c)


Gene families : OG_42_0001212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G177200.1

Target Alias Description ECC score Gene Family Method Actions
A4A49_34200 No alias protein flowering locus d 0.02 Orthogroups_2024-Update
Mp8g11530.1 No alias lysine-specific demethylase (LDL/KDM1) 0.03 Orthogroups_2024-Update
Solyc05g055580 No alias MSCS-like 2 (AHRD V3.3 --* AT5G10490.3) 0.03 Orthogroups_2024-Update
Solyc07g063450 No alias Lysine-specific histone demethylase 1-like protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g008320 No alias Lysine-specific histone demethylase 1-like protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0016491 oxidoreductase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR002937 Amino_oxidase 202 628
IPR007526 SWIRM 98 175
No external refs found!