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  5. Sobic.006G189700.1

Sobic.006G189700.1


Description : Unknown function


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G189700.1
Cluster HCAA Clusters: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Brara.C02675.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Brara.I03466.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.01G093800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.04G153400 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
HORVU7Hr1G002690.1 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g45780 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g06090 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g38460 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10433991g0020 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_447489g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00003461-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Potri.010G133700 No alias brassinosteroid-responsive RING-H2 0.03 Orthogroups_2024-Update
Seita.9G242700.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G280900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G046400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc04g054370 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G41400.1) 0.02 Orthogroups_2024-Update
Solyc05g018760 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Sopen07g023740 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 95 139
No external refs found!