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  5. Sobic.006G193200.3

Sobic.006G193200.3


Description : ligand-gated cation channel *(GLR)


Gene families : OG_42_0000065 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000065_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G193200.3
Cluster HCAA Clusters: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
A4A49_01237 No alias glutamate receptor 3.4 0.03 Orthogroups_2024-Update
A4A49_17163 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
At1g42540 No alias Glutamate receptor 3.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E7] 0.06 Orthogroups_2024-Update
At2g24710 No alias glutamate receptor 2.3 [Source:TAIR;Acc:AT2G24710] 0.03 Orthogroups_2024-Update
Glyma.07G226400 No alias glutamate receptor 2.8 0.03 Orthogroups_2024-Update
HORVU2Hr1G045730.11 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU7Hr1G031400.1 No alias ligand-gated cation channel *(GLR) 0.04 Orthogroups_2024-Update
HORVU7Hr1G031700.13 No alias ligand-gated cation channel *(GLR) 0.03 Orthogroups_2024-Update
PSME_00009649-RA No alias (at4g35290 : 475.0) Encodes a putative glutamate... 0.02 Orthogroups_2024-Update
PSME_00026595-RA No alias (at1g42540 : 291.0) member of Putative ligand-gated ion... 0.03 Orthogroups_2024-Update
PSME_00032127-RA No alias (at4g35290 : 436.0) Encodes a putative glutamate... 0.03 Orthogroups_2024-Update
Potri.001G374300 No alias glutamate receptor 2.7 0.03 Orthogroups_2024-Update
Sopen05g026960 No alias Receptor family ligand binding region 0.04 Orthogroups_2024-Update
Sopen07g026030 No alias Receptor family ligand binding region 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0015276 ligand-gated ion channel activity IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
CC GO:0009538 photosystem I reaction center IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016851 magnesium chelatase activity IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Predicted GO
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001638 Solute-binding_3/MltF_N 477 809
IPR001320 Iontro_rcpt 810 841
IPR001828 ANF_lig-bd_rcpt 48 407
No external refs found!