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  5. Sobic.006G197500.1

Sobic.006G197500.1


Description : bHLH-type transcription factor


Gene families : OG_42_0000286 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G197500.1
Cluster HCAA Clusters: Cluster_262

Target Alias Description ECC score Gene Family Method Actions
A4A49_05710 No alias transcription factor bhlh96 0.04 Orthogroups_2024-Update
At3g06120 No alias Transcription factor MUTE... 0.03 Orthogroups_2024-Update
Bradi1g71990 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g52150 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.B01465.1 No alias regulatory protein *(SPCH) of asymmetric cell division &... 0.02 Orthogroups_2024-Update
Brara.G01000.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
HORVU6Hr1G067000.2 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g52190 No alias helix-loop-helix DNA-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g23050 No alias helix-loop-helix DNA-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
Potri.008G202900 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G279300.1 No alias bHLH-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g098720 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily... 0.02 Orthogroups_2024-Update
Solyc09g091760 No alias bHLH transcription factor 151 0.03 Orthogroups_2024-Update
Solyc11g010340 No alias bHLH transcription factor 069 0.02 Orthogroups_2024-Update
Sopen03g003370 No alias Helix-loop-helix DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008170 N-methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR011598 bHLH_dom 81 130
No external refs found!