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  5. Sobic.006G205100.1

Sobic.006G205100.1


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G205100.1
Cluster HCAA Clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
447294 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
A4A49_23702 No alias putative e3 ubiquitin-protein ligase hip1 0.04 Orthogroups_2024-Update
At2g15530 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
At5g24870 No alias At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775] 0.04 Orthogroups_2024-Update
Bradi5g20760 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g24120 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Brara.D02257.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.F02695.1 No alias regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule... 0.03 Orthogroups_2024-Update
Brara.G02303.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.H00442.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.H02443.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G053909 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G174926 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G241900 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.06G041000 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G076600 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.12G158500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G024190.2 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU2Hr1G101370.5 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Kfl00011_0080 kfl00011_0080_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os01g49770 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g55510 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.04 Orthogroups_2024-Update
PSME_00030521-RA No alias (at5g10650 : 105.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G304900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G045500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.009G100100 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Pp1s162_69V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Seita.5G263300.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.6G090500.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.7G226600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Seita.7G272600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Solyc03g118840 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1) 0.06 Orthogroups_2024-Update
Solyc08g006460 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.04 Orthogroups_2024-Update
Solyc12g014070 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G53190.2) 0.02 Orthogroups_2024-Update
Solyc12g088740 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G42940.2) 0.02 Orthogroups_2024-Update
Solyc12g096420 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.03 Orthogroups_2024-Update
Sopen03g037790 No alias Ring finger domain 0.04 Orthogroups_2024-Update
Sopen08g002410 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen10g003040 No alias Ring finger domain 0.04 Orthogroups_2024-Update
Sopen12g032260 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.tig00000319.12 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0004484 mRNA guanylyltransferase activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Predicted GO
BP GO:0006370 7-methylguanosine mRNA capping IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008192 RNA guanylyltransferase activity IEP Predicted GO
BP GO:0009452 7-methylguanosine RNA capping IEP Predicted GO
BP GO:0016073 snRNA metabolic process IEP Predicted GO
BP GO:0016180 snRNA processing IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0034472 snRNA 3'-end processing IEP Predicted GO
BP GO:0034477 U6 snRNA 3'-end processing IEP Predicted GO
BP GO:0036260 RNA capping IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043628 ncRNA 3'-end processing IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
MF GO:0070568 guanylyltransferase activity IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 325 367
No external refs found!