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  5. Sobic.006G215000.1

Sobic.006G215000.1


Description : siRNA-binding factor *(AGO2) of non-canonical RdDM pathway


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G215000.1
Cluster HCAA Clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
Bradi1g54977 No alias Argonaute family protein 0.06 Orthogroups_2024-Update
Bradi3g60697 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.08 Orthogroups_2024-Update
Bradi5g18540 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Orthogroups_2024-Update
Bradi5g21800 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
Brara.H00354.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.03 Orthogroups_2024-Update
GRMZM2G059033 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G045050.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os04g47870 No alias PINHEAD, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g28850 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
PSME_00001016-RA No alias (at5g43810 : 1422.0) Encodes a member of the EIF2C... 0.07 Orthogroups_2024-Update
PSME_00043545-RA No alias (at1g69440 : 303.0) Encodes ARGONAUTE7, a member of the... 0.04 Orthogroups_2024-Update
Seita.4G225900.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.02 Orthogroups_2024-Update
Seita.7G236800.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.1 Orthogroups_2024-Update
Sobic.001G053700.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G136150.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.008G087200.1 No alias siRNA-integrating factor *(AGO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0001871 pattern binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004674 protein serine/threonine kinase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030247 polysaccharide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032474 Argonaute_N 263 387
IPR003165 Piwi 753 1047
IPR003100 PAZ_dom 470 576
IPR014811 ArgoL1 399 445
No external refs found!