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  5. Sobic.006G221000.1

Sobic.006G221000.1


Description : starch synthase *(SS3)


Gene families : OG_42_0001050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001050_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G221000.1
Cluster HCAA Clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Brara.H02696.1 No alias starch synthase *(SS3) 0.03 Orthogroups_2024-Update
Cre16.g665800 No alias starch synthase 4 0.02 Orthogroups_2024-Update
GRMZM2G121612 No alias starch synthase 3 0.04 Orthogroups_2024-Update
Glyma.13G204700 No alias starch synthase 3 0.04 Orthogroups_2024-Update
Glyma.15G108000 No alias starch synthase 3 0.06 Orthogroups_2024-Update
HORVU1Hr1G080950.5 No alias starch synthase *(SS4) 0.05 Orthogroups_2024-Update
HORVU2Hr1G106410.9 No alias starch synthase *(SS3) 0.07 Orthogroups_2024-Update
LOC_Os04g53310 No alias soluble starch synthase 3, chloroplast precursor,... 0.05 Orthogroups_2024-Update
Mp1g14910.1 No alias starch synthase (SSIV) 0.02 Orthogroups_2024-Update
Mp1g23570.1 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.04 Orthogroups_2024-Update
Potri.004G014100 No alias starch synthase 3 0.03 Orthogroups_2024-Update
Seita.7G243900.1 No alias starch synthase *(SS3) 0.1 Orthogroups_2024-Update
Solyc02g080570 No alias Soluble starch synthase 3, chloroplastic/amyloplastic... 0.02 Orthogroups_2024-Update
Sopen02g025270 No alias Carbohydrate binding domain (family 25) 0.06 Orthogroups_2024-Update
evm.model.tig00020746.8 No alias (at4g18240 : 154.0) starch synthase 4 (SS4); FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:2001070 starch binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Predicted GO
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006629 lipid metabolic process IEP Predicted GO
BP GO:0006631 fatty acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006751 glutathione catabolic process IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016829 lyase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016832 aldehyde-lyase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
BP GO:0032787 monocarboxylic acid metabolic process IEP Predicted GO
BP GO:0042219 cellular modified amino acid catabolic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Predicted GO
BP GO:0043171 peptide catabolic process IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044255 cellular lipid metabolic process IEP Predicted GO
BP GO:0044273 sulfur compound catabolic process IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005085 CBM25 486 572
IPR005085 CBM25 648 733
IPR005085 CBM25 312 391
IPR013534 Starch_synth_cat_dom 744 931
No external refs found!