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  5. Sobic.006G235600.1

Sobic.006G235600.1


Description : bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase *(BXL) & EC_3.2 glycosylase


Gene families : OG_42_0000397 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G235600.1
Cluster HCAA Clusters: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
At1g02640 No alias Probable beta-D-xylosidase 2... 0.02 Orthogroups_2024-Update
Glyma.10G257250 No alias Glycosyl hydrolase family protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G003910.1 No alias bifunctional alpha-L-arabinofuranosidase and... 0.04 Orthogroups_2024-Update
LOC_Os11g19160 No alias beta-D-xylosidase, putative, expressed 0.03 Orthogroups_2024-Update
MA_4577g0010 No alias (at5g64570 : 920.0) Encodes a beta-d-xylosidase that... 0.03 Orthogroups_2024-Update
MA_77922g0010 No alias (at5g64570 : 973.0) Encodes a beta-d-xylosidase that... 0.02 Orthogroups_2024-Update
PSME_00042582-RA No alias (at5g64570 : 979.0) Encodes a beta-d-xylosidase that... 0.05 Orthogroups_2024-Update
Potri.002G093900 No alias Glycosyl hydrolase family protein 0.02 Orthogroups_2024-Update
Solyc01g104950 No alias LEXYL2 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001764 Glyco_hydro_3_N 84 355
IPR002772 Glyco_hydro_3_C 402 631
IPR026891 Fn3-like 692 758
No external refs found!