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  5. Sobic.006G240400.1

Sobic.006G240400.1


Description : RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G240400.1
Cluster HCAA Clusters: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
Brara.F03830.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G118344 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G122223 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G174926 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G234300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.12G158500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G134600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os01g49770 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g48970 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.010G220700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G272600.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc12g040390 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT1G73760.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 613 654
No external refs found!