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  5. Sobic.006G256200.5

Sobic.006G256200.5


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G256200.5
Cluster HCAA Clusters: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
At2g01060 No alias Myb family transcription factor PHL7... 0.02 Orthogroups_2024-Update
At2g20400 No alias myb-like HTH transcriptional regulator family protein... 0.02 Orthogroups_2024-Update
At2g38300 No alias Myb-like HTH transcriptional regulator family protein... 0.02 Orthogroups_2024-Update
Brara.A00862.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Glyma.02G178100 No alias myb-like HTH transcriptional regulator family protein 0.02 Orthogroups_2024-Update
Glyma.08G305000 No alias Function unknown 0.02 Orthogroups_2024-Update
Glyma.11G183400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G089100 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.13G316600 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G017240.8 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
HORVU6Hr1G000410.1 No alias KANADI-type transcription factor 0.02 Orthogroups_2024-Update
Potri.003G100100 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Pp1s74_161V6 No alias transfactor-like protein 0.03 Orthogroups_2024-Update
Sobic.006G202300.2 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Solyc10g083340 No alias Myb family transcription factor APL (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc10g085620 No alias Myb family transcription factor APL (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen07g023530 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
BP GO:0000278 mitotic cell cycle IEP Predicted GO
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0004807 triose-phosphate isomerase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008276 protein methyltransferase activity IEP Predicted GO
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predicted GO
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0032780 negative regulation of ATPase activity IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042030 ATPase inhibitor activity IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
BP GO:0043086 negative regulation of catalytic activity IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043462 regulation of ATPase activity IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
BP GO:0044092 negative regulation of molecular function IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
BP GO:0051346 negative regulation of hydrolase activity IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 278 337
IPR025756 Myb_CC_LHEQLE 368 414
No external refs found!