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  5. At3g62310

At3g62310


Description : Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZQ9]


Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At3g62310
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
A4A49_00869 No alias putative pre-mrna-splicing factor atp-dependent rna... 0.03 Orthogroups_2024-Update
Bradi1g61220 No alias RNA helicase family protein 0.02 Orthogroups_2024-Update
Bradi3g59870 No alias RNA helicase family protein 0.03 Orthogroups_2024-Update
Brara.E01777.1 No alias RNA helicase *(Prp2) 0.03 Orthogroups_2024-Update
HORVU0Hr1G007860.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00020_0480 kfl00020_0480_v1.1 (at3g26560 : 1414.0) ATP-dependent RNA helicase,... 0.03 Orthogroups_2024-Update
Kfl00085_0100 kfl00085_0100_v1.1 (at1g32490 : 1214.0) Encodes a homolog of the yeast PRP2... 0.02 Orthogroups_2024-Update
Kfl00433_0080 kfl00433_0080_v1.1 (at1g33390 : 423.0) Over-expression of this gene results... 0.02 Orthogroups_2024-Update
MA_629782g0010 No alias (at5g13010 : 617.0) embryo defective 3011 (EMB3011);... 0.03 Orthogroups_2024-Update
Pp1s312_57V6 No alias deah-box rna helicase 0.05 Orthogroups_2024-Update
Sopen07g019130 No alias Oligonucleotide/oligosaccharide-binding (OB)-fold 0.04 Orthogroups_2024-Update
evm.model.contig_450.3 No alias (at3g62310 : 264.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
evm.model.contig_524.2 No alias (at3g62310 : 724.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update
evm.model.tig00000113.111 No alias (at1g33390 : 274.0) Over-expression of this gene results... 0.03 Orthogroups_2024-Update
evm.model.tig00022075.25 No alias (at3g62310 : 1059.0) RNA helicase family protein;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0004386 helicase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011709 DUF1605 616 692
IPR001650 Helicase_C 269 403
IPR007502 Helicase-assoc_dom 466 554
IPR011545 DEAD/DEAH_box_helicase_dom 69 226
No external refs found!