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  5. Sobic.006G268900.1

Sobic.006G268900.1


Description : light chain of clathrin triskelion


Gene families : OG_42_0001289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001289_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G268900.1
Cluster HCAA Clusters: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
107473 No alias Clathrin light chain protein 0.03 Orthogroups_2024-Update
A4A49_34116 No alias clathrin light chain 1 0.02 Orthogroups_2024-Update
Glyma.07G195000 No alias Clathrin light chain protein 0.03 Orthogroups_2024-Update
Glyma.15G072100 No alias Clathrin light chain protein 0.03 Orthogroups_2024-Update
Mp2g03080.1 No alias light chain of clathrin triskelion 0.03 Orthogroups_2024-Update
Seita.3G014300.1 No alias light chain of clathrin triskelion 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA 16Dec
BP GO:0006886 intracellular protein transport IEA 16Dec
BP GO:0016192 vesicle-mediated transport IEA 16Dec
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA 16Dec
CC GO:0030132 clathrin coat of coated pit IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000996 Clathrin_L-chain 96 203
No external refs found!