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  5. Sobic.006G270200.1

Sobic.006G270200.1


Description : Unknown function


Gene families : OG_42_0003122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003122_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G270200.1
Cluster HCAA Clusters: Cluster_129 Privacy policy

Target Alias Description ECC score Gene Family Method Actions
Bradi3g30757 No alias DNA mismatch repair protein MutS, type 2 0.07 Orthogroups_2024-Update
Bradi5g26420 No alias DNA mismatch repair protein MutS, type 2 0.04 Orthogroups_2024-Update
Glyma.02G221300 No alias DNA mismatch repair protein MutS, type 2 0.03 Orthogroups_2024-Update
LOC_Os04g58410 No alias smr domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g36530 No alias mutS domain V family protein, expressed 0.05 Orthogroups_2024-Update
Mp2g00480.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Pp1s98_33V6 No alias dna mismatch repair protein 0.03 Orthogroups_2024-Update
Seita.3G013000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G196100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc03g080010 No alias DNA mismatch repair protein MutS2-like (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
evm.model.tig00020629.149 No alias (at1g65070 : 234.0) DNA mismatch repair protein MutS,... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
BP GO:0006298 mismatch repair IEA 16Dec
MF GO:0030983 mismatched DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004000 adenosine deaminase activity IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0006382 adenosine to inosine editing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006650 glycerophospholipid metabolic process IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
BP GO:0007265 Ras protein signal transduction IEP Predicted GO
BP GO:0007266 Rho protein signal transduction IEP Predicted GO
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0016553 base conversion or substitution editing IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0046486 glycerolipid metabolic process IEP Predicted GO
BP GO:0046488 phosphatidylinositol metabolic process IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002625 Smr_dom 841 910
IPR000432 DNA_mismatch_repair_MutS_C 423 607
No external refs found!