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  5. Sobic.006G273400.1

Sobic.006G273400.1


Description : trans-splicing factor *(PPR4)


Gene families : OG_42_0006730 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006730_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G273400.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi5g26670 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
Brara.J02712.1 No alias trans-splicing factor *(PPR4) 0.02 Orthogroups_2024-Update
Potri.010G241300 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Seita.3G009400.1 No alias trans-splicing factor *(PPR4) 0.14 Orthogroups_2024-Update
Solyc11g006680 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update
Sopen11g002610 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 111 183
IPR002885 Pentatricopeptide_repeat 276 335
IPR002885 Pentatricopeptide_repeat 484 541
IPR002885 Pentatricopeptide_repeat 566 614
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 395 424
IPR002885 Pentatricopeptide_repeat 360 389
IPR033443 PPR_long 643 785
No external refs found!