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  5. Sobic.006G274933.1

Sobic.006G274933.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000112 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000112_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G274933.1
Cluster HCAA Clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
172230 No alias ARM repeat superfamily protein 0.04 Orthogroups_2024-Update
At3g02840 No alias ARM repeat superfamily protein... 0.03 Orthogroups_2024-Update
Brara.A02915.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.04G212300 No alias plant U-box 22 0.03 Orthogroups_2024-Update
Glyma.09G172100 No alias CYS, MET, PRO, and GLY protein 1 0.02 Orthogroups_2024-Update
Glyma.11G214500 No alias CYS, MET, PRO, and GLY protein 1 0.04 Orthogroups_2024-Update
Glyma.12G095000 No alias plant U-box 24 0.04 Orthogroups_2024-Update
Glyma.14G212200 No alias CYS, MET, PRO, and GLY protein 1 0.03 Orthogroups_2024-Update
HORVU7Hr1G040790.2 No alias E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
MA_10430196g0010 No alias (at2g35930 : 192.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
MA_10432813g0010 No alias (at3g52450 : 140.0) Encodes a cytoplasmically localized... 0.02 Orthogroups_2024-Update
MA_200041g0010 No alias (at3g19380 : 209.0) plant U-box 25 (PUB25); FUNCTIONS... 0.03 Orthogroups_2024-Update
MA_415344g0010 No alias (at2g35930 : 169.0) Encodes a cytoplasmically localized... 0.04 Orthogroups_2024-Update
Potri.002G070500 No alias plant U-box 29 0.02 Orthogroups_2024-Update
Potri.017G135000 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Solyc01g007000 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc01g080920 No alias LOW QUALITY:U-box domain-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g005700 No alias U-box domain-containing family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen01g032510 No alias U-box domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 13 83
No external refs found!