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  5. Sobic.006G275900.1

Sobic.006G275900.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.006G275900.1
Cluster HCAA Clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
106096 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
110016 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
111767 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
132724 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
79052 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_30034 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.02 Orthogroups_2024-Update
At2g33760 No alias Pentatricopeptide repeat-containing protein At2g33760... 0.03 Orthogroups_2024-Update
At5g06540 No alias Pentatricopeptide repeat-containing protein At5g06540... 0.05 Orthogroups_2024-Update
Bradi1g69800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.A01120.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.A03178.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Brara.J00787.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
Brara.K01537.1 No alias RNA editing factor *(CRR28) 0.03 Orthogroups_2024-Update
Brara.K01695.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G096602 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Glyma.01G180600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Glyma.07G196400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.09G232200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G074100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Glyma.20G155800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G163300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G012210.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os06g08650 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g13540 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os08g42610 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_10432704g0020 No alias (at4g18750 : 463.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00003821-RA No alias (at4g13650 : 639.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00022686-RA No alias (at1g11290 : 619.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00043165-RA No alias (at3g13770 : 384.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.005G010900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s68_207V6 No alias ppr gene for putative pentatricopeptide repeat-like protein PPR 0.04 Orthogroups_2024-Update
Sopen01g032860 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 43 70
IPR002885 Pentatricopeptide_repeat 457 481
IPR002885 Pentatricopeptide_repeat 285 312
IPR002885 Pentatricopeptide_repeat 71 97
IPR002885 Pentatricopeptide_repeat 256 281
IPR002885 Pentatricopeptide_repeat 381 429
IPR002885 Pentatricopeptide_repeat 174 224
IPR032867 DYW_dom 604 700
No external refs found!