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  5. Sobic.007G006800.3

Sobic.007G006800.3


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G006800.3
Cluster HCAA Clusters: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
121365 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
173093 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
52147 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
A4A49_17130 No alias pentatricopeptide repeat-containing protein dot4, chloroplastic 0.03 Orthogroups_2024-Update
A4A49_19306 No alias pentatricopeptide repeat-containing protein,... 0.03 Orthogroups_2024-Update
At5g13270 No alias Pentatricopeptide repeat-containing protein At5g13270,... 0.03 Orthogroups_2024-Update
Bradi1g00491 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g20230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g22990 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g49477 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g23670 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g27440 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g42710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g45110 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g50550 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Orthogroups_2024-Update
Bradi2g62180 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g05000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi3g36470 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g45620 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g48960 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g52870 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g55520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g28137 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Bradi4g30190 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
Bradi4g42160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi5g13537 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.F01443.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G001466 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G019689 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G020008 No alias mitochondrial RNAediting factor 1 0.03 Orthogroups_2024-Update
GRMZM2G022884 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G031588 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G040947 No alias pentatricopeptide (PPR) repeat-containing protein 0.05 Orthogroups_2024-Update
GRMZM2G060337 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G060536 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G073017 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G084176 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G099875 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G103078 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G144071 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G163396 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G168378 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G177715 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G331779 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G430710 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G440349 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
GRMZM5G849971 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
GRMZM5G862936 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G006900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G244300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G206900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G249400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G141600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G006200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G273200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G161800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G221300 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G134700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU2Hr1G035300.1 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g32620 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g43430 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g33920 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_483636g0010 No alias (at3g61170 : 684.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00009521-RA No alias (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00011140-RA No alias (at1g11290 : 575.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00011207-RA No alias (at3g63370 : 641.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00017531-RA No alias (at1g11290 : 661.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00017551-RA No alias (at4g18750 : 421.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00022685-RA No alias (at3g46790 : 552.0) Encodes a member of a PCMP (plant... 0.02 Orthogroups_2024-Update
PSME_00022741-RA No alias (at4g18750 : 598.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00024580-RA No alias (at4g02750 : 440.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
PSME_00032959-RA No alias (at3g46790 : 529.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
PSME_00036103-RA No alias (at2g13600 : 422.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036492-RA No alias (at2g22070 : 524.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00036639-RA No alias (at1g11290 : 691.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00042924-RA No alias (at3g57430 : 662.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00050906-RA No alias (at4g33170 : 629.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00056168-RA No alias (at3g61170 : 686.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056594-RA No alias (at3g53360 : 383.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
Potri.001G019500 No alias SLOW GROWTH 1 0.02 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.005G019400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G060600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G245300 No alias Function unknown 0.04 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Potri.014G029500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G018700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.016G077700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G083900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.017G091600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.1G263300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.2G373100.1 No alias RNA editing factor *(OTP90) 0.04 Orthogroups_2024-Update
Seita.3G244400.1 No alias RNA editing factor *(MEF32) 0.06 Orthogroups_2024-Update
Seita.4G168900.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Seita.5G176900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G302500.1 No alias Unknown function 0.08 Orthogroups_2024-Update
Seita.5G326600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.5G357300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G360300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G468800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G051400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.6G130100.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Seita.7G165500.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G075300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G001600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G068200.1 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
Seita.9G151300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G202100.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G403900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g007850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.03 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g005850 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g040060 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Sopen01g006160 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen01g033110 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen01g041280 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g033370 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g002990 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g003770 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g028590 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g029160 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen03g034990 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen03g038010 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.02 Orthogroups_2024-Update
Sopen05g018650 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen06g022100 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen06g024560 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen06g035950 No alias PPR repeat family 0.04 Orthogroups_2024-Update
Sopen07g017190 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g022420 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g004700 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen09g033130 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen11g001900 No alias PPR repeat 0.04 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g026910 No alias PPR repeat family 0.02 Orthogroups_2024-Update
Sopen11g029050 No alias PPR repeat family 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000725 recombinational repair IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 147 172
IPR002885 Pentatricopeptide_repeat 348 369
IPR002885 Pentatricopeptide_repeat 173 220
IPR002885 Pentatricopeptide_repeat 273 321
IPR032867 DYW_dom 490 583
No external refs found!