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  5. Sobic.007G034500.1

Sobic.007G034500.1


Description : RNA editing factor *(MORF)


Gene families : OG_42_0000510 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000510_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.007G034500.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
Bradi1g50640 No alias differentiation and greening-like 1 0.04 Orthogroups_2024-Update
Bradi3g14650 No alias plastid developmental protein DAG, putative 0.05 Orthogroups_2024-Update
Bradi4g22160 No alias Function unknown 0.03 Orthogroups_2024-Update
Bradi5g20660 No alias differentiation and greening-like 1 0.03 Orthogroups_2024-Update
Brara.D02033.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
Brara.D02132.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Brara.E00914.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Brara.F00767.1 No alias RNA editing factor *(MORF) 0.05 Orthogroups_2024-Update
Brara.G00411.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Brara.H02711.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
Brara.K01028.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
GRMZM2G003765 No alias plastid developmental protein DAG, putative 0.05 Orthogroups_2024-Update
GRMZM2G383540 No alias plastid developmental protein DAG, putative 0.03 Orthogroups_2024-Update
GRMZM5G808811 No alias differentiation and greening-like 1 0.04 Orthogroups_2024-Update
Glyma.10G005100 No alias differentiation and greening-like 1 0.03 Orthogroups_2024-Update
Glyma.12G228400 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
HORVU6Hr1G002030.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
LOC_Os08g04450 No alias DAG protein, chloroplast precursor, putative, expressed 0.03 Orthogroups_2024-Update
Potri.008G169900 No alias plastid developmental protein DAG, putative 0.05 Orthogroups_2024-Update
Potri.011G112200 No alias cobalt ion binding 0.04 Orthogroups_2024-Update
Seita.6G068800.1 No alias RNA editing factor *(MORF) 0.06 Orthogroups_2024-Update
Seita.6G225500.1 No alias RNA editing factor *(MORF) 0.04 Orthogroups_2024-Update
Seita.7G225200.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Seita.7G238200.1 No alias RNA editing factor *(MORF) 0.02 Orthogroups_2024-Update
Seita.8G095000.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Sobic.010G013900.1 No alias RNA editing factor *(MORF) 0.03 Orthogroups_2024-Update
Solyc02g079770 No alias DAG protein (AHRD V3.3 *** B6TYI4_MAIZE) 0.06 Orthogroups_2024-Update
Solyc06g008220 No alias DAG protein (AHRD V3.3 *** A0A0K9Q0F0_ZOSMR) 0.07 Orthogroups_2024-Update
Solyc10g007180 No alias DAG protein (AHRD V3.3 *** A0A0K9PW98_ZOSMR) 0.02 Orthogroups_2024-Update
Sopen02g024010 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen02g024540 No alias hypothetical protein 0.07 Orthogroups_2024-Update
Sopen05g033420 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Sopen06g003080 No alias hypothetical protein 0.04 Orthogroups_2024-Update
Sopen10g003300 No alias hypothetical protein 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!