Sobic.007G035500.1

Description : EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase

Gene families : OG_42_0000627 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000627_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.007G035500.1
Cluster	HCAA Clusters: Cluster_161

Target	Alias	Description	ECC score	Gene Family Method
121532	No alias	Pyridoxal phosphate (PLP)-dependent transferases...	0.02	Orthogroups_2024-Update
78872	No alias	Pyridoxal phosphate (PLP)-dependent transferases...	0.03	Orthogroups_2024-Update
Bradi2g51170	No alias	Pyridoxal phosphate (PLP)-dependent transferases...	0.03	Orthogroups_2024-Update
Brara.G00044.1	No alias	EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase	0.03	Orthogroups_2024-Update
HORVU1Hr1G003330.2	No alias	aromatic amino acid decarboxylase & EC_4.1 carbon-carbon lyase	0.03	Orthogroups_2024-Update
HORVU2Hr1G114390.1	No alias	EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase	0.02	Orthogroups_2024-Update
LOC_Os08g04540	No alias	decarboxylase, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os08g04560	No alias	decarboxylase, putative, expressed	0.04	Orthogroups_2024-Update
Mp7g06530.1	No alias	aromatic L-amino acid decarboxylase	0.02	Orthogroups_2024-Update
Potri.013G052800	No alias	Pyridoxal phosphate (PLP)-dependent transferases...	0.03	Orthogroups_2024-Update
Potri.016G114300	No alias	Pyridoxal phosphate (PLP)-dependent transferases...	0.03	Orthogroups_2024-Update
Seita.2G117700.1	No alias	EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase	0.02	Orthogroups_2024-Update
Seita.9G256700.1	No alias	EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase	0.03	Orthogroups_2024-Update
Sobic.002G120700.1	No alias	EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase	0.03	Orthogroups_2024-Update
Solyc07g054280	No alias	Tyrosine decarboxylase (AHRD V3.3 *** Q000T5_ARICO)	0.05	Orthogroups_2024-Update
Sopen03g009450	No alias	Pyridoxal-dependent decarboxylase conserved domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	IEA	16Dec
BP	GO:0019752	carboxylic acid metabolic process	IEA	16Dec
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	16Dec
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050662	coenzyme binding	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predicted GO
MF	GO:0000287	magnesium ion binding	IEP	Predicted GO
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Predicted GO
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Predicted GO
MF	GO:0005506	iron ion binding	IEP	Predicted GO
BP	GO:0006694	steroid biosynthetic process	IEP	Predicted GO
BP	GO:0006825	copper ion transport	IEP	Predicted GO
BP	GO:0008202	steroid metabolic process	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
MF	GO:0010333	terpene synthase activity	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predicted GO
MF	GO:0016229	steroid dehydrogenase activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Predicted GO
MF	GO:0016838	carbon-oxygen lyase activity, acting on phosphates	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
BP	GO:0035434	copper ion transmembrane transport	IEP	Predicted GO
MF	GO:0043169	cation binding	IEP	Predicted GO
MF	GO:0046872	metal ion binding	IEP	Predicted GO
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002129	PyrdxlP-dep_de-COase	59	442

External Links

No external refs found!

Sobic.007G035500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation